搜索此博客

显示标签为“statistics”的博文。显示所有博文
显示标签为“statistics”的博文。显示所有博文

2009年7月23日星期四

北美蝴蝶物种多样性的统计研究

ResearchBlogging.org

今天在学校听了来自 UC Irvine 的 [Bradford A. Hawkins 教授](http://www.faculty.uci.edu/profile.cfm?faculty_id=4562)的一个讲座。 据说Hawkins 是生物地理学和宏观生态学方面的大牛,可惜听讲前自己没有做足功课,虽然讲座是近期少见的信息量大、富启发意义的题目,却没有听得太明白。 好在回来搜论文找到了 Hawkins 等即将发表的关于同一个研究的[论文](http://dx.doi.org/10.1111/j.1365-2699.2009.02119.x)。

Hawkins 等人使用了墨西哥以北的北美地区夏季和冬季的蝴蝶物种丰度资料,将蝴蝶亚科按照分布范围分成热带和非热带两部分进行讨论。从物种丰度在纬度方向上的梯度看,热带类型的蝴蝶物种明显地表现出夏季向北迁徙或者 recolonize 的趋势;而非热带类型的蝴蝶则很少表现出有长距离的迁移。而以亚科在包括弄蝶总科 Hesperioidea 和凤蝶总科 Papilionoidea 的整个谱系树上的遗传距离(Mean Root Distance, MRD)来看,北美地区靠近热带的南部物种间的距离较短。 如果蝴蝶起源于热带的假设成立,这说明非热带物种多是适应了较寒冷气候的进化支。

根据对 8 个可能因素的回归分析,热带物种的丰度跟温度正相关,与热带地区的距离成负相关。非热带物种丰度与温度的关系更复杂一些。虽然夏季温度还是与物种丰度正相关,冬季温度较高的地区物种丰度却不一定更高。作者提出的解释是对于适应了较寒冷环境的蝴蝶物种,冬季温度有一个最适范围,高于这个范围的温度可能会扰乱休眠期的蝴蝶的生理活动,导致其数量减少甚至局部灭绝。一些对北半球气候变化造成的物种向北迁移的现象可以作为这个观点的一个注脚。

作者在文末指出形成北美蝴蝶多样性梯度的根本原因在于蝴蝶的热带起源和第三纪中期以来的长期气候变化模式。Hawkins 今天在讲座中进一步指出在欧洲、澳大利亚、智利、南非等地区也都发现了类似的梯度分布,可见他的观点具有相当强的解释力。这一研究不仅能用来解释北美现有的蝴蝶多样性梯度,也有可能被用来进一步研究蝴蝶各亚科和物种的进化和迁徙模式。这种研究方法理论上说也应该可以应用于其它起源于热带的物种,但对于蝶科的生活史、习性和物种分布的完整研究是做出这样研究的前提条件,不知道在无脊椎动物中还有哪些物种有这样完整的研究记录。

这一研究也揭示了气候变化引起的冬季温度变化将会给非热带蝴蝶物种带来的问题。从北美地区来看,热带物种可能不会仅仅因为温度上升就迁往更朝北的地区,但非热带物种聚集的地带可能会向北移动,欧洲也是如此,甚至有可能在热带和非热带物种区之间形成一个空白地带,也许会对这些地区的农业和林业产生影响。

Hawkins, B., & DeVries, P. (2009). Tropical niche conservatism and the species richness gradient of North American butterflies Journal of Biogeography DOI: 10.1111/j.1365-2699.2009.02119.x

Capturing cross-scale interactions

People studying ecological resilience talk about cross-scale interactions a lot. Yet people often claim that cross-scale interaction is in play without quantitative evidence. [Researchers from Argentina](http://dx.doi.org/10.1007/s10021-005-0091-9) in 2005 proposed to use regression on data sets collected in different years to identify the existence of cross-scale interactions.

The approach cannot tell what really is cross-interacting with other variables, yet. And being a statistical method, it requires a huge amount of data. Perhaps by regression of multiple series and types of data, and with the aid of conceptual models, this approach can bring more insight into the system.

2008年9月15日星期一

小棺材升级版和空间统计

ScienceDaily 今天的一篇文章报道了美国俄勒冈州立大学利用来自多个部门的统计数据辨识该州境内的非法药物“热点”地区。其采集的数据包括服食药物致死的案例,被发现的非法药物实验室的位置和药物制造过程中排放的烟气和其它化学物质等等。目前这个成果只是在会议上发表,还没有写成论文,所以不好评论其方法和结论。不过这种方法倒是让人想起了传染病学研究早期在地图上画小棺材寻找病源的方法。

当然那种方法并没有涉及严格的统计分析。OSU 的研究者们使用的是名为 SaTScan 的空间统计软件。这个软件已经被医学界的研究人员使用了较长的时间,比较成熟。在它的主页上粗略看了一下,似乎它主要是用于在空间和时间上离散的事件的统计分析。但从2006年的7.0版本开始,正态分布模型的加入使其可以处理样本的连续属性或者大的样本中的定序数据。虽然软件本身不支持可视化,但是似乎在很多空间应用中可以提供有效的统计手段,在相对贫乏的空间统计实现中似乎还是一个很有竞争力的选择。

2008年8月19日星期二

How will statistics go spatial

摘要:讨论空间统计的元素和面临的困难以及可能的发展方向。

When I consider the organisation of my thesis I want to boast that my study has used free software GIS -- Grass GIS as well as free statistics software package/language R to achieve spatial statistics capacity where even many commercial software packages are handicapped, as the two champions in the free software world can cooperate almost seamlessly, processing map and data back and forth and providing convicing statistics on a map.  However after a second thought I realised that "statistics on a map" is not the equivalent of "spatial statistics".

Although Geographic Information Systems were designed and built with statistics in mind, geographical data in its early days only were included as a context for other data such as census or measurement.  From an early GIS-generated map we can obtain information such as the total number of cars in UK and their distribution in various cities whose population is larger than x.  This is of course useful information but is insufficient now that people have more demands on geographical data itself, partly thanks to Google Maps/Earth and all those mash-up applications.  Therefore the statistics ability of GIS needs to be enhanced, allowing it to be able to process geographical data both as an explanatory variable and a dependent variable, instead of just as a context.

By geographical data I mean the following attributes:
























  • Vicinity




  • Direction




  • Gradient




  • Visibility




  • Fragmentation




  • Shape




  • Spatial correlation




  • Accessibility




  • Anomalies




  • Agents and behaviour



This is, of course, just a non-exhaustive list.  At present most GIS can only process a few of these attributes at a not very satistying level.  To enhance the ability of GIS, there are some hurdles that have to be overcome first.  The biggest one may be the problem of describing.  The nature of GIS and its supporting technology determine that GIS use mathematic-based, reductionist approaches to store and express data in a discrete way, however geography is continuous, with some concepts that are difficult to quantify.  How do we state "the habitat is located around the intersection of a footpath and a main highway bridge near Baxton, with a thinner canopy in the northern part providing more favourable conditions for lower storey plants" to a computer?  A promising direction of development seems lies in semantics and cognition science.

Another problem is the model used.  In geography everything is linked, then how does one represent such link with mathematical models?  Besides, statistics in its traditional sense is the aggregation of measurements, which can bring unexpected results in geographical studies.  This is especially a prominent problem if social processes are involved.  At least, the simple aggregation based on descriptive statistics will have a more limited role.  New techniques such as fractal mathematics and trend analysis may have more contribution to the solution to the problem in the future.

The more developed spatial statistics perhaps also will put a demand on more sophisticated spatial data, although the improvement of methodology can alleviate such demand.  When statisticians and geographers look at more subtle aspects of natural and social interactions going on on the ground, they will need more data such as the heteogeneity within a "patch" and individual behaviour.  In return GIS fed on these data may provide some insights in design of public spaces, priority of conservation, and so on.

I decide to wait and try to contribute to the (r)evolution of new spatial statistics.  Before that takes place my thesis will be "using GIS technology and simple statistics with a spatial concern".

Many of the ideas in this entry comes from or are inspired by this slide by Michael F.Goodchild in University of California, Santa Barbara.